Scaffold DIA File Compatibility Matrix

Scaffold DIA imports and analyzes data (using msconvert) from various types of Mass Spectrometers. Data loading is conveniently performed through a dialog that guides the user in setting all of the parameters needed for data analysis and protein identification.

Scaffold DIA supports a number of vendors’ data file formats and open file formats.

  • Thermo RAW Files
  • SCIEX WIFF

Theoretically, Scaffold DIA supports any data format (Bruker, Agilent, etc) with DIA windowing that can be processed by msconvert, but only the two above (Thermo, SCIEX) are well tested.

For ProteoWizard (and msconvert) details and open formats supported, see this page:

http://proteowizard.sourceforge.net/formats.shtml

 

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