Scaffold PTM Citations

The following article provides a list of journal articles, presentations and posters that reference the use of Scaffold PTM. If you have an article that you would like to have added to the list contact sales@proteomesoftware.com.

Short N-terminal galanin fragments are occurring naturally in vivo
Neuropeptides (2017)
Robert Ihnatko, Elvar Theodorsson
Neuropeptides (2017)

Comparative Monomethylarginine Proteomics Suggests that Protein Arginine Methyltransferase 1 (PRMT1) is a Significant Contributor to Arginine Monomethylation in Toxoplasma gondii
Molecular and Cellular Proteomics (2017)
Rama R. Yakubu, Natalie C. Silmon de Monerri, Edward Nieves, Kami Kim‡, and Louis M. Weiss
Molecular and Cellular Proteomics (2017)

Identification of Posttranslational Modifications of Endogenous Chromatin Proteins From Testicular Cells by Mass Spectrometry
Methods in Enzymology (2017)
N. Gupta, S. Pentakota, L. N. Mishra, R.Jones, M. R. S. Rao
Methods in Enzymology (2017)

Heterogeneous nuclear ribonucleoprotein K inhibits heat shock-induced transcriptional activity of heat shock factor 1
Journal of Biological Chemistry (2017)
Hee-Jung Kim, Jae-Jin Lee, Jin-Hwan Cho, Jaeho Jeong, A Young Park, Wonmo Kang and Kong-Joo Lee
Journal of Biological Chemistry (2017)

Crenomytilus grayanus 40 kDa calponin-like protein: cDNA cloning, sequence analysis, tissue expression, and post-translational modifications
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics (2017)
Oleg S.Matusovsky, Anna V. Dobrzhanskaya, Victoria V.Pankova, Konstantin V. Kiselev, Ulyana V.Girich, Nikolay S.Shelud'ko
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics (2017)

Quantitative proteomics and phosphoproteomics of sugar beet monosomic addition line M14 in response to salt stress
Journal of Proteomics (2016)
Bing Yua, Jinna Li, Jin Koh, Craig Dufresne, Na Yang, Shishi Qi, Yongxue Zhang, Chunquan Ma, Benjamin V. Duonge, Sixue Chen, Haiying Li
Journal of Proteomics (2016)

Mesoporous metal oxide nanoparticles for selective enrichment of phosphopeptides from complex sample matrices
Analytical Methods (2016)
Meng Han and Zhen Li
Analytical Methods (2016)

Nuclear phosphoproteomics analysis reveals that CDK1/2 are involved in EGF-regulated constitutive pre-mRNA splicing in MDA-MB-468 cells
Journal of Proteomics (2016)
Xianwei Chena, Dan Guo, Yinghui Zhu, Feng Xian, Siqi Liu, Lin Wu, Xiaomin Lou
Journal of Proteomics (2016)

Coordinated activation of mitochondrial respiration and exocytosis mediated by PKC signaling in pancreatic β cells
Journal of the Federation of American Societies for Experimental Biology (2016)
Jaime Santo-Domingo, Isabelle Chareyron, Loïc Dayon, Antonio Núñez Galindo, Ornella Cominetti, María Pilar Giner Giménez, Umberto De Marchi, Carles Canto, Martin Kussmann and Andreas Wiederkehr
Journal of the Federation of American Societies for Experimental Biology (2016)

Phosphodiesterase 9A Controls Nitric-oxide Independent cGMP and Hypertrophic Heart Disease
Nature (2015)
Dong I. Lee, Guangshuo Zhu, Takashi Sasaki, Gun-Sik Cho, Nazha Hamdani, Ronald Holewinski, Su-Hyun Jo, Thomas Danner, Manling Zhang, Peter P. Rainer, Djahida Bedja, Jonathan A. Kirk, Mark J. Ranek, Wolfgang R. Dostmann, Chulan Kwon, Kenneth B. Margulies, Jennifer E. Van Eyk, Walter J. Paulus, Eiki Takimoto, and David A. Kass
Nature (2015)

Comprehensive identification of phosphorylation sites on the Numb endocytic adaptor protein
Proteomics (2015)
Jonathan R. Krieger, Paul Taylor, Michael F. Moran, C. Jane McGlade
Proteomics (2015)

Dynamic changes in the date palm fruit proteome during development and ripening
Horticulture Research (2014)
Claudius Marondedze, Christoph Gehring, and Ludivine Thomas
Horticulture Research (2014)

Cardiac resynchronization sensitizes the sarcomere to calcium by reactivating GSK-3β
Journal of Clinical Investigation (2014)
Jonathan A. Kirk, Ronald J. Holewinski, Viola Kooij, Giulio Agnetti, Richard S. Tunin, Namthip Witayavanitkul, Pieter P. de Tombe, Wei Dong Gao, Jennifer Van Eyk, and David A. Kass
Journal of Clinical Investigation (2014)

A systems toxicology approach identifies Lyn as a key signaling phosphoprotein modulated by mercury in a B lymphocyte cell model
Toxicology and Applied Pharmacology (2014)
Joseph A. Caruso, Paul M. Stemmer, Alan Dombkowski, Nicholas J.Caruthers, Randall Gill, Allen J. Rosenspire
Toxicology and Applied Pharmacology (2014)

Analysis of phosphoproteome in rice pistil
Proteomics (2014)
Kun Wang, Yong Zhao, Ming Li, Feng Gao, Ming-kun Yang, Xin Wang, Shaoqing Li, Pingfang Yang
Proteomics (2014)

Combined Phosphoproteomics and Bioinformatics Strategy in Deciphering Drug Resistant Related Pathways in Triple Negative Breast Cancer
International Journal of Proteomics (2014)
Xinyu Deng, Morris Kohanfars, Huan Ming Hsu, Puneet Souda, Joe Capri, Julian P. Whitelegge, and Helena R. Chang
International Journal of Proteomics (2014)

Phosphoproteomic analysis of the non-seed vascular plant model Selaginella moellendorffii
Proteome Science (2014)
Xi Chen, Wai Lung Chan, Fu-Yuan Zhu, Clive Lo
Proteome Science (2014)

A bidirectional antagonism between aPKC and Yurt regulates epithelial cell polarity
Journal of Cell Biology (2014)
Clémence L. Gamblin, Émilie J.-L. Hardy, François J.-M. Chartier, Nicolas Bisson, Patrick Laprise
Journal of Cell Biology (2014)

Phosphoproteomic analysis identifies activated MET-axis PI3K/AKT and MAPK/ERK in lapatinib-resistant cancer cell line
Experimental & Molecular Medicine (2013)
Yong Yook Lee, Hwang-Phill Kim, Min Jueng Kang, Byoung-Kyu Cho, Sae-Won Han, Tae-You Kim, and Eugene C Yi
Experimental & Molecular Medicine (2013)

Myosin 3A Kinase Activity Is Regulated by Phosphorylation of the Kinase Domain Activation Loop
Journal of Biological Chemistry (2013)
Omar A. Quintero, William C. Unrath, Stanley M. Stevens Jr., Uri Manor, Bechara Kachar and Christopher M. Yengo
Journal of Biological Chemistry (2013)

Phosphorylation Regulates myo-Inositol-3-phosphate Synthase
A NOVEL REGULATORY MECHANISM OF INOSITOL BIOSYNTHESIS
Journal of Biological Chemistry (2013)
Rania M. Deranieh, Quan He, Joseph A. Caruso and Miriam L. Greenberg
Journal of Biological Chemistry (2013)

Comprehensive Proteomics Analysis Reveals New Substrates and Regulators of the Fission Yeast Clp1/Cdc14 Phosphatase
Molecular and Cellular Proteomics (2013)
Jun-Song Chen, Matthew R. Broadus, Janel R. McLean, Anna Feoktistova, Liping Ren and Kathleen L. Gould
Molecular and Cellular Proteomics (2013)

Identification and Quantitation of Signal Molecule-Dependent Protein Phosphorylation
Cyclic Nucleotide Signaling in Plants (2013)
Arnoud Groen Ludivine Thomas Kathryn Lilley Claudius Marondedze
Cyclic Nucleotide Signaling in Plants (2013)

Discovery of O-GlcNAc-6-phosphate Modified Proteins in Large-scale Phosphoproteomics Data
Molecular and Cellular Proteomics (2012)
Hannes Hahne and Bernhard Kuster
Molecular and Cellular Proteomics (2012)

Investigation of local primary structure effects on peroxynitrite-mediated tyrosine nitration using targeted mass spectrometry
Journal of Proteomics (2012)
Kent W.Seeley Stanley M. Stevens Jr
Journal of Proteomics (2012)

Identification of a Role for CLASP2 in Insulin Action
Journal of Biological Chemistry (2012)
Paul Langlais, James L. Dillon, April Mengos, Debra P. Baluch, Ranna Ardebili, Danielle N. Miranda, Xitao Xie, Bradlee L. Heckmann, Jun Liu and Lawrence J. Mandarino,
Journal of Biological Chemistry (2012)

Comparative phosphoproteomics studies of macrophage response to bacterial virulence effectors
Journal of Proteomics (2012)
Chen Chen, Di Wu, Leike Zhang, Yong Zhao, Lin Guo
Journal of Proteomics (2012)

Site-specific phosphorylation of protein phosphatase 1 regulatory subunit 12A stimulated or suppressed by insulin
Journal of Proteomics (2012)
Alex Chao, Xiangmin Zhang, Danjun Ma, Paul Langlais, Moulun Luo, Lawrence J. Mandarino, Morgan Zingsheim, Kimberly Pham, James Dillon, Zhengping Yi
Journal of Proteomics (2012)

Determining In Vivo Phosphorylation Sites Using Mass Spectrometry
Current Protocols in Molecular Biology (2012)
Susanne B. Breitkopf. John M. Asara
Current Protocols in Molecular Biology (2012)

Insulin-stimulated phosphorylation of protein phosphatase 1 regulatory subunit 12B revealed by HPLC-ESI-MS/MS
Proteome Science (2012)
Kimberly Pham, Paul Langlais, Xiangmin Zhang, Alex Chao, Morgan Zingsheim and Zhengping Yi
Proteome Science (2012)

Novel tyrosine phosphorylation sites in rat skeletal muscle revealed by phosphopeptide enrichment and HPLC-ESI-MS/MS
Journal of Proteomics (2012)
Xiangmin Zhang, Kurt Højlund, Moulun Luo, Christian Meyer, Thangiah Geetha, Zhengping Yi
Journal of Proteomics (2012)

 

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